scglue.metrics.seurat_alignment_score

scglue.metrics.seurat_alignment_score(x, y, neighbor_frac=0.01, n_repeats=4, random_state=None, **kwargs)

Seurat alignment score

Parameters:

• x (numpy.ndarray) – Coordinates

• y (numpy.ndarray) – Batch labels

• neighbor_frac (float) – Nearest neighbor fraction

• n_repeats (int) – Number of subsampling repeats

• random_state (typing.Union[RandomState, int, None]) – Random state

• **kwargs – Additional keyword arguments are passed to sklearn.neighbors.NearestNeighbors

Return type:

float

Returns:

sas – Seurat alignment score