scglue.utils.ConfigManager

class scglue.utils.ConfigManager[source]

Bases: object

Global configurations

Methods

Attributes

`ALLOW_TRAINING_INTERRUPTION`	Allow interruption before model training converges.
`ANNDATA_KEY`	Key in `adata.uns` for storing dataset configurations.
`ARRAY_SHUFFLE_NUM_WORKERS`	Number of background workers for array data shuffling.
`BEDTOOLS_PATH`	Path to bedtools executable.
`CHECKPOINT_SAVE_INTERVAL`	Automatically save checkpoints every n epochs.
`CHECKPOINT_SAVE_NUMBERS`	Maximal number of checkpoints to preserve at any point.
`CPU_ONLY`	Whether computation should use only CPUs.
`CUDNN_MODE`	CuDNN computation mode, should be one of {"repeatability", "performance"}.
`DATALOADER_FETCHES_PER_BATCH`	Number of fetches per batch in data loader (read-only).
`DATALOADER_FETCHES_PER_WORKER`	Number of fetches per worker per batch to use in data loader.
`DATALOADER_NUM_WORKERS`	Number of worker processes to use in data loader.
`DATALOADER_PIN_MEMORY`	Whether to use pin memory in data loader.
`FORCE_TERMINATE_WORKER_PATIENCE`	Seconds to wait before force terminating unresponsive workers.
`GRAPH_SHUFFLE_NUM_WORKERS`	Number of background workers for graph data shuffling.
`MASKED_GPUS`	A list of GPUs that should not be used when selecting computation device.
`PRINT_LOSS_INTERVAL`	Print loss values every n epochs.
`TENSORBOARD_FLUSH_SECS`	Flush tensorboard logs to file every n seconds.
`TMP_PREFIX`	Prefix of temporary files and directories created.
`logger`