scglue.genomicsΒΆ
Genomics operations
Functions
Distance-based power decay weight, computed as \(w = {\left( \frac {d + 1000} {1000} \right)} ^ {-0.75}\) |
|
Trim version suffix from Ensembl ID |
|
Get chromosome length information from fasta index file |
|
Compute distance and relative position between two bed intervals |
|
Read BED file |
|
Read GTF file |
|
Regulatory inference based on feature embeddings |
|
Build prior regulatory graph anchored on RNA genes |
|
Construct a window graph between two sets of genomic features, where features pairs within a window size are connected. |
Classes
BED format data frame |
|
GTF format data frame |