scglue package can be installed via conda using one of the following commands:
conda install -c conda-forge -c bioconda scglue # CPU only conda install -c conda-forge -c bioconda scglue pytorch-gpu # With GPU support
Or, it can also be installed via pip:
pip install scglue
To avoid potential dependency conflicts, installing within a conda environment is recommended.
Some functions in the
scglue package use metacell aggregation via k-Means clustering,
which can receive significant speed up with the faiss package.
You may install
faiss following the official guide.
Now you are all set. Proceed to tutorials for how to use the