Example datasets
By courtesy of the original authors, we provide here the following preprocessed data files used in our paper:
Dataset |
Protocol |
Species |
Organ |
Publication |
Source |
Processed files |
---|---|---|---|---|---|---|
Chen-2019 |
SNARE-seq |
Mouse |
Cortex |
High-throughput sequencing of the transcriptome and chromatin accessibility in the same cell |
||
Ma-2020 |
SHARE-seq |
Mouse |
Skin |
Chromatin potential identified by shared single-cell profiling of RNA and chromatin |
||
10x-Multiome-Pbmc10k |
10x Multiome |
Human |
PBMC |
|||
Saunders-2018 |
Drop-seq |
Mouse |
Cortex |
Molecular diversity and specializations among the cells of the adult mouse brain |
||
Luo-2017 |
snmC-seq |
Mouse |
Cortex |
Single-cell methylomes identify neuronal subtypes and regulatory elements in mammalian cortex |
||
10x-ATAC-Brain5k |
10x ATAC |
Mouse |
Cortex |
|||
Cao-2020 |
sci-RNA-seq3 |
Human |
15 organs |
|||
Domcke-2020 |
sci-ATAC-seq3 |
Human |
15 organs |
|||
Muto-2021 |
snRNA-seq,
scATAC-seq
|
Human |
Kidney |
|||
Yao-2021 |
10x RNA v3,
snATAC-seq
|
Mouse |
MOp |
A transcriptomic and epigenomic cell atlas of the mouse primary motor cortex |