scglue.data.bedmap2anndata
- scglue.data.bedmap2anndata(bedmap, var_col=3, obs_col=6)[source]
Convert bedmap result to
anndata.AnnData
object- Parameters
bedmap (
os.PathLike
) – Path to bedmap resultvar_col (
int
) – Variable column (0-based)obs_col (
int
) – Observation column (0-based)
- Return type
- Returns
adata – Converted
anndata.AnnData
object
Note
Similar to
rliger::makeFeatureMatrix
, but more automated and memory efficient.