scglue.genomics.Bed
- class scglue.genomics.Bed(*args, **kwargs)[source]
Bases:
ConstrainedDataFrame
BED format data frame
Methods
Expand genomic features towards upstream and downstream
Compute nucleotide content in the BED regions
Read BED file
Rectify data frame for format integrity
Convert to strand-specific end sites of genomic features
Convert to strand-specific start sites of genomic features
Convert to a
pybedtools.BedTool
objectVerify data frame for format integrity
Write BED file
Attributes
COLUMNS