scglue.models.data.AnnDataset
- class scglue.models.data.AnnDataset(adatas, data_configs, mode='train', getitem_size=1)[source]
Bases:
Dataset
Dataset for
anndata.AnnData
objects with partial pairing support.- Parameters
*adatas – An arbitrary number of configured
anndata.AnnData
objectsdata_configs (
typing.List
[typing.Mapping
[str
,typing.Any
]]) – Data configurations, one per datasetmode (
str
) – Data mode, must be one of{"train", "eval"}
getitem_size (
int
) – Unitary fetch size for each __getitem__ call
Methods
Accept shuffling result
Propose shuffling using a given random seed
Randomly split the dataset into multiple subdatasets according to given fractions.
Attributes
adatas
Internal
AnnData
objectsdata_configs
Data configuration for each dataset
logger