scglue.num

Numeric operations

Functions

all_counts	Check whether an array contains all counts
col_pcc	Column-wise Pearson's correlation coefficient (sparse friendly)
col_spr	Column-wise Spearman's rank correlation
col_var	Column-wise variance (sparse friendly)
cov_mat	Covariance matrix (sparse friendly)
densify	Convert a matrix to dense regardless of original type.
normalize_edges	Normalize graph edge weights
pcc_mat	Pearson's correlation coefficient (sparse friendly)
prob_or	Combined multiple probabilities in a logical OR manner.
prod	Product of elements
sigmoid	The sigmoid function in numpy
spr_mat	Spearman's rank correlation
tfidf	TF-IDF normalization (following the Seurat v3 approach)
vertex_degrees	Compute vertex degrees