Example datasets

By courtesy of the original authors, we provide here the following preprocessed data files used in our paper:

Dataset

Protocol

Species

Organ

Publication

Source

Processed files

Chen-2019

SNARE-seq

Mouse

Cortex

High-throughput sequencing of the transcriptome and chromatin accessibility in the same cell

GEO

Ma-2020

SHARE-seq

Mouse

Skin

Chromatin potential identified by shared single-cell profiling of RNA and chromatin

GEO

10x-Multiome-Pbmc10k

10x Multiome

Human

PBMC

10x Demo

Saunders-2018

Drop-seq

Mouse

Cortex

Molecular diversity and specializations among the cells of the adult mouse brain

dropviz

Saunders-2018.h5ad

Luo-2017

snmC-seq

Mouse

Cortex

Single-cell methylomes identify neuronal subtypes and regulatory elements in mammalian cortex

annoj

Luo-2017.h5ad

10x-ATAC-Brain5k

10x ATAC

Mouse

Cortex

10x Demo

10x-ATAC-Brain5k.h5ad

Cao-2020

sci-RNA-seq3

Human

15 organs

A human cell atlas of fetal gene expression

GEO

Cao-2020.h5ad

Domcke-2020

sci-ATAC-seq3

Human

15 organs

A human cell atlas of fetal chromatin accessibility

GEO

Domcke-2020.h5ad

Muto-2021

snRNA-seq,
scATAC-seq

Human

Kidney

Single cell transcriptional and chromatin accessibility profiling redefine cellular heterogeneity in the adult human kidney

GEO

Yao-2021

10x RNA v3,
snATAC-seq

Mouse

MOp

A transcriptomic and epigenomic cell atlas of the mouse primary motor cortex

NeMO