scglue.models.scglue.IndSCGLUEModel¶
-
class
scglue.models.scglue.
IndSCGLUEModel
(adatas, vertices, latent_dim=50, h_depth=2, h_dim=256, dropout=0.2, shared_batches=False, random_seed=0)[source]¶ Bases:
scglue.models.scglue.SCGLUEModel
Independent GLUE model as a negative control where data reconstruction is independent from feature embeddings
- Parameters
adatas (
Mapping
[str
,AnnData
]) – Datasets (indexed by domain name)vertices (
List
[str
]) – Prior graph vertices (must cover feature names in all domains)latent_dim (
int
) – Latent dimensionalityh_depth (
int
) – Hidden layer depth for encoder and discriminatorh_dim (
int
) – Hidden layer dimensionality for encoder and discriminatordropout (
float
) – Dropout rateshared_batches (
bool
) – Whether the same batches are shared across domainsrandom_seed (
int
) – Random seed
Note
Do NOT use!
Methods
Attributes
logger