scglue.data.metacell_corr

scglue.data.metacell_corr(*adatas, use_rep=None, n_meta=None, skeleton=None, method='spr')[source]

Metacell based correlation

Parameters

  • *adatas – Datasets to be correlated, where .X are raw counts (indexed by domain name)

  • use_rep (Optional[str]) – Data representation based on which to cluster meta-cells

  • n_meta (Optional[int]) – Number of metacells to use

  • skeleton (Optional[Graph]) – Skeleton graph determining which pair of features to correlate

  • method (str) – Correlation method, must be one of {“pcc”, “spr”}

Return type

Graph

Returns

corr – A skeleton-based graph containing correlation as edge attribute “corr”