scglue.metrics.avg_silhouette_width

scglue.metrics.avg_silhouette_width(x, y, **kwargs)

Cell type average silhouette width

Parameters

• x (numpy.ndarray) – Coordinates

• y (numpy.ndarray) – Cell type labels

• **kwargs – Additional keyword arguments are passed to sklearn.metrics.silhouette_score()

Return type

float

Returns

asw – Cell type average silhouette width

Note

Follows the definition in OpenProblems NeurIPS 2021 competition