scglue.metrics.avg_silhouette_width_batch
- scglue.metrics.avg_silhouette_width_batch(x, y, ct, **kwargs)[source]
Batch average silhouette width
- Parameters
x (
numpy.ndarray
) – Coordinatesy (
numpy.ndarray
) – Batch labelsct (
numpy.ndarray
) – Cell type labels**kwargs – Additional keyword arguments are passed to
sklearn.metrics.silhouette_samples()
- Return type
- Returns
asw_batch – Batch average silhouette width
Note
Follows the definition in OpenProblems NeurIPS 2021 competition