scglue.metrics.neighbor_conservation
- scglue.metrics.neighbor_conservation(x, y, batch, neighbor_frac=0.01, **kwargs)[source]
Neighbor conservation score
- Parameters
x (
numpy.ndarray
) – Cooordinates after integrationy (
numpy.ndarray
) – Coordinates before integrationb – Batch
**kwargs – Additional keyword arguments are passed to
sklearn.neighbors.NearestNeighbors
- Return type
- Returns
nn_cons – Neighbor conservation score