scglue.metrics.seurat_alignment_score
- scglue.metrics.seurat_alignment_score(x, y, neighbor_frac=0.01, n_repeats=4, random_state=None, **kwargs)[source]
Seurat alignment score
- Parameters
x (
numpy.ndarray
) – Coordinatesy (
numpy.ndarray
) – Batch labelsneighbor_frac (
float
) – Nearest neighbor fractionn_repeats (
int
) – Number of subsampling repeatsrandom_state (
typing.Union
[RandomState
,int
,None
]) – Random state**kwargs – Additional keyword arguments are passed to
sklearn.neighbors.NearestNeighbors
- Return type
- Returns
sas – Seurat alignment score