scglue.data.bedmap2anndata

scglue.data.bedmap2anndata(bedmap, var_col=3, obs_col=6)[source]

Convert bedmap result to anndata.AnnData object

Parameters:

  • bedmap (os.PathLike) – Path to bedmap result

  • var_col (int) – Variable column (0-based)

  • obs_col (int) – Observation column (0-based)

Return type:

AnnData

Returns:

adata – Converted anndata.AnnData object

Note

Similar to rliger::makeFeatureMatrix, but more automated and memory efficient.