scglue.models.scglue

Graph-linked unified embedding (GLUE) for single-cell multi-omics data integration

Functions

configure_dataset	Configure dataset for model training
register_prob_model	Register probabilistic model

Classes

AnnDataset	Dataset for anndata.AnnData objects with partial pairing support.
IndSCGLUE	GLUE network where cell and feature in different domains are independent
IndSCGLUEModel	Independent GLUE model as a negative control where data reconstruction is independent from feature embeddings
IndSCGLUETrainer	Trainer for IndSCGLUE
PairedSCGLUEModel	GLUE model for partially-paired single-cell multi-omics data integration
PairedSCGLUETrainer	Paired trainer for SCGLUE
SCGLUE	GLUE network for single-cell multi-omics data integration
SCGLUEModel	GLUE model for single-cell multi-omics data integration
SCGLUETrainer	Trainer for SCGLUE