scglue.genomics.read_ctx_grn
- scglue.genomics.read_ctx_grn(file)[source]
Read pruned TF-target GRN as generated by
pyscenic ctx
- Parameters:
file (
os.PathLike
) – Input file (.csv)- Return type:
- Returns:
grn – Pruned TF-target GRN
Note
Node attribute “type” can be used to distinguish TFs and genes