scglue.models.scclue.SCCLUEModel.encode_data

SCCLUEModel.encode_data(key, adata, batch_size=128)[source]

Compute data sample (cell) embedding

Parameters:

  • key (str) – Modality key

  • adata (AnnData) – Input dataset

  • batch_size (int) – Size of minibatches

Return type:

numpy.ndarray

Returns:

embedding – Data sample (cell) embedding