scglue
Contents:
Installation guide
Tutorials
Example datasets
API documentation
scglue
scglue.check
scglue.data
scglue.data.aggregate_obs
scglue.data.aggregate_var
scglue.data.bedmap2anndata
scglue.data.calc_hypo_score
scglue.data.count_prep
scglue.data.estimate_balancing_weight
scglue.data.extract_rank_genes_groups
scglue.data.get_gene_annotation
scglue.data.get_metacells
scglue.data.lsi
scglue.data.merge_mc_cov
scglue.data.metacell_corr
scglue.data.metacell_regr
scglue.data.transfer_labels
scglue.data.AllCoolsLSI
scglue.genomics
scglue.graph
scglue.metrics
scglue.models
scglue.num
scglue.plot
scglue.typehint
scglue.utils
Release notes
Developer guide
Credits
scglue
API documentation
scglue
scglue.data
scglue.data.AllCoolsLSI
scglue.data.AllCoolsLSI.transform
View page source
scglue.data.AllCoolsLSI.transform
AllCoolsLSI.
transform
(
data
,
chunk_size
=
50000
,
obsm_name
=
'X_lsi'
,
verbose
=
False
,
normalize
=
True
)
[source]