scglue.genomics.write_scenic_feather

scglue.genomics.write_scenic_feather(gene2tf_rank, feather, version=2)[source]

Write cis-regulatory ranking to a SCENIC-compatible feather file

Parameters:

  • gene2tf_rank (DataFrame) – Cis regulatory ranking between genes and transcription factors, as generated by cis_reg_ranking()

  • feather (os.PathLike) – Path to the output feather file

  • version (int) – SCENIC feather version

Return type:

None