scglue.metrics

性能评估指标

函数

avg_silhouette_width

Cell type average silhouette width

avg_silhouette_width_batch

Batch average silhouette width

foscttm

Fraction of samples closer than true match (smaller is better)

graph_connectivity

Graph connectivity

mean_average_precision

Mean average precision

neighbor_conservation

Neighbor conservation score

normalized_mutual_info

Normalized mutual information with true clustering

seurat_alignment_score

Seurat alignment score