scglue.data.lsi

scglue.data.lsi(adata, n_components=20, use_highly_variable=None, **kwargs)

LSI analysis (following the Seurat v3 approach)

参数:

• adata (AnnData) – Input dataset

• n_components (int) – Number of dimensions to use

• use_highly_variable (typing.Optional[bool]) – Whether to use highly variable features only, stored in adata.var['highly_variable']. By default uses them if they have been determined beforehand.

• **kwargs – Additional keyword arguments are passed to sklearn.utils.extmath.randomized_svd()

返回类型:

None