scglue.data.metacell_corr
- scglue.data.metacell_corr(*adatas, skeleton=None, method='spr', agg_fns=None, prep_fns=None, **kwargs)[源代码]
Metacell based correlation
- 参数:
*adatas (
AnnData
) – Datasets to be correlatedskeleton (
typing.Optional
[Graph
]) – Skeleton graph determining which pair of features to correlatemethod (
str
) – Correlation method, must be one of {“pcc”, “spr”}agg_fns (
typing.Optional
[typing.List
[str
]]) – Aggregation functions used to obtain metacells for each dataset, must be one of {“sum”, “mean”}prep_fns (
typing.Optional
[typing.List
[typing.Optional
[typing.Callable
[[AnnData
],None
]]]]) – Preprocessing functions to be applied to metacells for each dataset,None
indicates no preprocessing**kwargs – Additional keyword arguments are passed to
get_metacells()
- 返回类型:
- 返回:
corr – A skeleton-based graph containing correlation as edge attribute “corr”
备注
All aggregation, preprocessing and correlation apply to
adata.X
.