scglue.genomics.Bed

class scglue.genomics.Bed(*args, **kwargs)[源代码]

BED format data frame

方法

`expand`	Expand genomic features towards upstream and downstream
`nucleotide_content`	Compute nucleotide content in the BED regions
`read_bed`	Read BED file
`rectify`	Rectify data frame for format integrity
`strand_specific_end_site`	Convert to strand-specific end sites of genomic features
`strand_specific_start_site`	Convert to strand-specific start sites of genomic features
`to_bedtool`	Convert to a `pybedtools.BedTool` object
`verify`	Verify data frame for format integrity
`write_bed`	Write BED file

属性

COLUMNS