scglue.genomics.read_ctx_grn

scglue.genomics.read_ctx_grn(file)[源代码]

Read pruned TF-target GRN as generated by pyscenic ctx

参数:

file (os.PathLike) – Input file (.csv)

返回类型:

DiGraph

返回:

grn – Pruned TF-target GRN

备注

Node attribute “type” can be used to distinguish TFs and genes