scglue.metrics.avg_silhouette_width_batch

scglue.metrics.avg_silhouette_width_batch(x, y, ct, **kwargs)[source]

Batch average silhouette width

Parameters:

x (numpy.ndarray) – Coordinates
y (numpy.ndarray) – Batch labels
ct (numpy.ndarray) – Cell type labels
**kwargs – Additional keyword arguments are passed to sklearn.metrics.silhouette_samples()

Return type:

float

Returns:

asw_batch – Batch average silhouette width

Note