scglue.metrics.normalized_mutual_info

scglue.metrics.normalized_mutual_info(x, y, **kwargs)

Normalized mutual information with true clustering

Parameters:

• x (numpy.ndarray) – Coordinates

• y (numpy.ndarray) – Cell type labels

• **kwargs – Additional keyword arguments are passed to sklearn.metrics.normalized_mutual_info_score()

Return type:

float

Returns:

nmi – Normalized mutual information

Note

Follows the definition in OpenProblems NeurIPS 2021 competition