scglue.metrics.neighbor_conservation

scglue.metrics.neighbor_conservation(x, y, batch, neighbor_frac=0.01, **kwargs)

Neighbor conservation score

Parameters:

• x (numpy.ndarray) – Cooordinates after integration

• y (numpy.ndarray) – Coordinates before integration

• b – Batch

• **kwargs – Additional keyword arguments are passed to sklearn.neighbors.NearestNeighbors

Return type:

float

Returns:

nn_cons – Neighbor conservation score