scglue.metrics.foscttm

scglue.metrics.foscttm(x, y, **kwargs)[source]

Fraction of samples closer than true match (smaller is better)

Parameters:

x (numpy.ndarray) – Coordinates for samples in modality X
y (numpy.ndarray) – Coordinates for samples in modality y
**kwargs – Additional keyword arguments are passed to scipy.spatial.distance_matrix()

Return type:

typing.Tuple[numpy.ndarray, numpy.ndarray]

Returns:

foscttm_x, foscttm_y – FOSCTTM for samples in modality X and Y, respectively

Note

Samples in modality X and Y should be paired and given in the same order